.. _visualizations:

Protein visualizations
======================


UCSF Chimera
------------

https://www.cgl.ucsf.edu/chimera/

UCSF Chimera is a highly extensible program for interactive visualization and analysis of molecular structures and related data, including density maps, supramolecular assemblies, sequence alignments, docking results, trajectories, and conformational ensembles. High-quality images and animations can be generated. Chimera includes complete documentation and several tutorials, and can be downloaded free of charge for academic, government, nonprofit, and personal use.


nglview
-------

IPython widget to interactively view molecular structures and trajectories.

Data visualization
==================


Bokeh
-----


bqplot
------